To resolve this issue, you can modify the regular expression to exclude array keys that are already enclosed in single quotes. Here's an updated regex that should work:
$fileContent = preg_replace('/^!|$([a-zA-Z_\x80-\xff][a-zA-Z0-9_\x80-\xff]*)\[(?<!\')([a-zA-Z_][a-z0-9_]+)(?!\')\]/','$[\'\']', $fileContent, -1, $c1);
The key difference is the addition of negative lookbehind and negative lookahead assertions to exclude array keys that are already enclosed in single quotes. Specifically, the (?<!\') assertion checks that the opening bracket is not preceded by a single quote, and the (?!\') assertion checks that the closing bracket is not followed by a single quote.
With this modification, the regex should only match array keys that are not already enclosed in single quotes, and should not cause syntax errors when replacing them with quoted keys.
Note that this solution assumes that array keys are only enclosed in single quotes, and not double quotes or backticks. If your code uses other types of quotes for array keys, you may need to modify the regular expression accordingly.